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I had never heard the term "Superseding Return," but apparently IRS has and it's a term of art. So it doesn't matter whether it's a new 1040 or a 1040-X, it's the filing date that counts.
- The due date of a calendar year individual income tax return is April 15th. If April 15th falls on a weekend or holiday, the return is due on the next business day. A fiscal year individual income tax return is due the fifteenth day of the fourth month following the close of the fiscal year. - An amended (Form 1040-X) or corrected (duplicate) return filed on or before the due date or the extended due date is a superseding return. 
- Correspondence postmarked on or before the due date or extended due date, requesting changes to tax returns, is processed as superseding information. 
 
- Consider the following when making a superseding adjustment: - Changes in irrevocable elections (e.g., Section 179, Joint to Separate) Note:- A return filed after the original due date but on or before the extended due date does not constitute a superseding return in this situation. 
- Manual computation of ES Penalty. Refer to IRM 20.1.3, Estimated Tax Penalties. 
- Reversal of offsets to other Individual Master File (IMF), Business Master File (BMF), and Debtor Master File (DMF) accounts when increasing the balance due 
- Returns meeting Examination criteria. Follow procedures in Exhibit 21.5.3-2, Examination Criteria (CAT-A) - General. 
- Reversal of the offset to the Treasury Offset Program, refer to IRM 21.4.6.5.7.1, Allowable TOP Offset Reversals. 
- Use the appropriate non-refile blocking series (e.g., 05, 77, 99, etc). Refer to IRM 21.5.1.5.3, CIS Source Documentation, and Document 6209 - Section 4 - Adjustment Blocking Series, for additional information. 
- Use item reference number 871 when necessary. Refer to IRM 20.1.2.2.6.2, Incorrect Tax Shown Recorded, and IRM 20.1.2.2.6.3, Wrong Return Posted First, for additional information. 
 Exception:- Use the appropriate refile blocking series when required to be associated with the original return (e.g., separate to joint).